PH01000000G4360's details annotation
1.Annotation
ICBR annotation: gamma-tubulin complex component 6, putative, expressed
Blast result AT3G43610 : 3.20E-49
Blast annotation: Spc97 / Spc98 family of spindle pole body (SBP) component
2.Location
Scaffold: PH01000000
Strand: +
| Region | Start | End |
| gene | 2844495 | 2851840 |
| mRNA | 2844495 | 2851840 |
| exon | 2844495 | 2844968 |
| exon | 2845063 | 2845222 |
| exon | 2845324 | 2845487 |
| exon | 2845785 | 2845864 |
| exon | 2846053 | 2846131 |
| exon | 2847036 | 2847097 |
| exon | 2848772 | 2849188 |
| exon | 2849419 | 2849575 |
| exon | 2850695 | 2851840 |
| CDS | 2844852 | 2844968 |
| CDS | 2845063 | 2845222 |
| CDS | 2845324 | 2845487 |
| CDS | 2845785 | 2845864 |
| CDS | 2846053 | 2846131 |
| CDS | 2847036 | 2847097 |
| CDS | 2848772 | 2849188 |
| CDS | 2849419 | 2849575 |
| CDS | 2850695 | 2850865 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04130.12 | Spc97_Spc98 | 1 | 191 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000226 | microtubule cytoskeleton organization |
| GO:0000922 | spindle pole |
| GO:0005815 | microtubule organizing center |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.