Annotation of co-expression genes

PH01000001G2870's details annotation

1.Annotation

ICBR annotation: white-brown complex homolog protein 11, putative, expressed

Blast result AT1G17840 : 0.00E+00
Blast annotation: white-brown complex homolog protein 11

2.Location

Scaffold: PH01000001
Strand: -

RegionStartEnd
gene19025351908413
mRNA19025351908413
exon19025351903201
exon19032851903392
exon19040231904295
exon19043821904468
exon19046001904794
exon19049291905057
exon19051551905277
exon19054051905576
exon19057131906002
exon19072281908413
CDS19028751903201
CDS19032851903392
CDS19040231904295
CDS19043821904468
CDS19046001904794
CDS19049291905057
CDS19051551905277
CDS19054051905576
CDS19057131906002
CDS19072281907659

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00005.26ABC_tran86237
PF01061.23ABC2_membrane399604

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0016020membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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