PH01000002G1960's details annotation
1.Annotation
ICBR annotation: CBS domain-containing protein, putative, expressed
Blast result AT5G50530 : 6.00E-139
Blast annotation: CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein
2.Location
Scaffold: PH01000002
Strand: +
| Region | Start | End |
| gene | 1391252 | 1396420 |
| mRNA | 1391252 | 1396420 |
| exon | 1391252 | 1391792 |
| exon | 1392431 | 1392644 |
| exon | 1392695 | 1392827 |
| exon | 1392911 | 1393081 |
| exon | 1393222 | 1393300 |
| exon | 1393600 | 1393666 |
| exon | 1393778 | 1393883 |
| exon | 1393971 | 1394029 |
| exon | 1394345 | 1394454 |
| exon | 1394886 | 1394984 |
| exon | 1395361 | 1395466 |
| exon | 1395498 | 1395587 |
| exon | 1395661 | 1396420 |
| CDS | 1391695 | 1391792 |
| CDS | 1392431 | 1392644 |
| CDS | 1392695 | 1392827 |
| CDS | 1392911 | 1393081 |
| CDS | 1393222 | 1393300 |
| CDS | 1393600 | 1393666 |
| CDS | 1393778 | 1393883 |
| CDS | 1393971 | 1394029 |
| CDS | 1394345 | 1394454 |
| CDS | 1394886 | 1394984 |
| CDS | 1395361 | 1395466 |
| CDS | 1395498 | 1395587 |
| CDS | 1395661 | 1395840 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00571.27 | CBS | 47 | 89 |
| PF00571.27 | CBS | 122 | 166 |
| PF00571.27 | CBS | 252 | 297 |
| PF00564.23 | PB1 | 413 | 451 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.