Annotation of co-expression genes

PH01000003G3570's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT5G11560 : 0.00E+00
Blast annotation: catalytics

2.Location

Scaffold: PH01000003
Strand: +

RegionStartEnd
gene23646772370293
mRNA23646772370293
exon23646772365153
exon23652132365273
exon23657622365883
exon23659922366107
exon23661882366995
exon23673402368071
exon23681762368397
exon23686702368765
exon23688592369053
exon23697552370293
CDS23648122365153
CDS23652132365273
CDS23657622365883
CDS23659922366107
CDS23661882366995
CDS23673402368071
CDS23681762368397
CDS23686702368765
CDS23688592369053
CDS23697552370246

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000520ER_membrane_protein_complex
GT96 GlycosylTransferases
TKL-Pl-4 (from iTAK)
coexpression networkCFinderM001644ER_membrane_protein_complex
RNA_degradation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13360.5PQQ_2131255
PF07774.12DUF1620804904

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0072546ER membrane protein complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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