PH01000004G0650's details annotation
1.Annotation
ICBR annotation: polypyrimidine tract-binding protein, putative, expressed
Blast result AT1G43190 : 9.00E-121
Blast annotation: polypyrimidine tract-binding protein 3
2.Location
Scaffold: PH01000004
Strand: -
| Region | Start | End |
| gene | 434181 | 439359 |
| mRNA | 434181 | 439359 |
| exon | 434181 | 434863 |
| exon | 434988 | 435131 |
| exon | 435215 | 435322 |
| exon | 435577 | 435714 |
| exon | 435760 | 435811 |
| exon | 436011 | 436052 |
| exon | 436290 | 436354 |
| exon | 437573 | 437654 |
| exon | 437946 | 438022 |
| exon | 438306 | 439359 |
| CDS | 434474 | 434863 |
| CDS | 434988 | 435131 |
| CDS | 435215 | 435322 |
| CDS | 435577 | 435714 |
| CDS | 435760 | 435811 |
| CDS | 436011 | 436052 |
| CDS | 436290 | 436354 |
| CDS | 437573 | 437654 |
| CDS | 437946 | 438022 |
| CDS | 438306 | 438362 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13893.5 | RRM_5 | 181 | 276 |
| PF00076.21 | RRM_1 | 311 | 375 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.