PH01000004G3000's details annotation
1.Annotation
ICBR annotation: 3-deoxy-D-manno-octulosonic-acid transferase, putative, expressed
Blast result AT5G03770 : 1.70E-48
Blast annotation: KDO transferase A
2.Location
Scaffold: PH01000004
Strand: +
| Region | Start | End |
| gene | 1906393 | 1909995 |
| mRNA | 1906393 | 1909995 |
| exon | 1906393 | 1908023 |
| exon | 1908130 | 1908172 |
| exon | 1908560 | 1908682 |
| exon | 1908889 | 1909008 |
| exon | 1909095 | 1909173 |
| exon | 1909334 | 1909995 |
| CDS | 1907938 | 1908023 |
| CDS | 1908130 | 1908172 |
| CDS | 1908560 | 1908682 |
| CDS | 1908889 | 1909008 |
| CDS | 1909095 | 1909173 |
| CDS | 1909334 | 1909491 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT30 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04413.15 | Glycos_transf_N | 2 | 151 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Lipopolysaccharide biosynthesis | 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12] | ko00540 | K02527 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.