PH01000005G0270's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G54385 : 8.00E-123
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000005
Strand: -
| Region | Start | End |
| gene | 176325 | 181519 |
| mRNA | 176325 | 181519 |
| exon | 176325 | 176956 |
| exon | 177088 | 181519 |
| CDS | 176444 | 176956 |
| CDS | 177088 | 178449 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000245 | spliceosomal complex assembly |
| GO:0000398 | mRNA splicing, via spliceosome |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.