PH01000005G2020's details annotation
1.Annotation
ICBR annotation: phospholipase, patatin family, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000005
Strand: +
| Region | Start | End |
| gene | 1273336 | 1275515 |
| mRNA | 1273336 | 1275515 |
| exon | 1273336 | 1273898 |
| exon | 1273965 | 1274001 |
| exon | 1274528 | 1274601 |
| exon | 1274721 | 1274814 |
| exon | 1275142 | 1275515 |
| CDS | 1273827 | 1273898 |
| CDS | 1273965 | 1274001 |
| CDS | 1274528 | 1274601 |
| CDS | 1274721 | 1274814 |
| CDS | 1275142 | 1275344 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001050 | SNARE_interactions_in_vesicular_transport |
| coexpression network | CFinderM001872 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity, Riboflavin_metabolism riboflavin biosynthetic process, isoprenoid biosynthetic process, nucleic acid binding, Terpenoid_backbone_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.