PH01000007G2400's details annotation
1.Annotation
ICBR annotation: nucleoporin, putative, expressed
Blast result AT2G05120 : 0.00E+00
Blast annotation: Nucleoporin, Nup133/Nup155-like
2.Location
Scaffold: PH01000007
Strand: -
| Region | Start | End |
| gene | 1579450 | 1586699 |
| mRNA | 1579450 | 1586699 |
| exon | 1579450 | 1580311 |
| exon | 1580714 | 1580781 |
| exon | 1581306 | 1581624 |
| exon | 1581810 | 1581968 |
| exon | 1582765 | 1583480 |
| exon | 1584006 | 1585781 |
| exon | 1585878 | 1586002 |
| exon | 1586202 | 1586699 |
| CDS | 1579766 | 1580311 |
| CDS | 1580714 | 1580781 |
| CDS | 1581306 | 1581624 |
| CDS | 1581810 | 1581968 |
| CDS | 1582765 | 1583480 |
| CDS | 1584006 | 1585781 |
| CDS | 1585878 | 1586002 |
| CDS | 1586202 | 1586380 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08801.10 | Nucleoporin_N | 74 | 519 |
| PF03177.13 | Nucleoporin_C | 995 | 1120 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | nuclear pore complex protein Nup133 | ko03013 | K14300 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.