PH01000013G2540's details annotation
1.Annotation
ICBR annotation: DEAD-box ATP-dependent RNA helicase, putative, expressed
Blast result AT2G47330 : 0.00E+00
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000013
Strand: -
| Region | Start | End |
| gene | 1777173 | 1782655 |
| mRNA | 1777173 | 1782655 |
| exon | 1777173 | 1778471 |
| exon | 1778594 | 1779008 |
| exon | 1779088 | 1779124 |
| exon | 1779323 | 1780551 |
| exon | 1781751 | 1782655 |
| CDS | 1778420 | 1778471 |
| CDS | 1778594 | 1779008 |
| CDS | 1779088 | 1779124 |
| CDS | 1779323 | 1780551 |
| CDS | 1781751 | 1782102 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00270.28 | DEAD | 169 | 339 |
| PF00271.30 | Helicase_C | 389 | 485 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | ATP-dependent RNA helicase DDX42 [EC:3.6.4.13] | ko03041 | K12835 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
| GO:0008026 | ATP-dependent helicase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.