Annotation of co-expression genes

PH01000014G0610's details annotation

1.Annotation

ICBR annotation: auxin response factor, putative, expressed

Blast result AT1G19220 : 1.00E-147
Blast annotation: auxin response factor 19

2.Location

Scaffold: PH01000014
Strand: +

RegionStartEnd
gene384006387135
mRNA384006387135
exon384006384542
exon384820384887
exon385023385118
exon385215385271
exon385348385503
exon385587385688
exon385865386049
exon386137386301
exon386353386578
exon386815386953
exon387005387135
CDS384497384542
CDS384820384887
CDS385023385118
CDS385215385271
CDS385348385503
CDS385587385688
CDS385865386049
CDS386137386301
CDS386353386578
CDS386815386953
CDS387005387048

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF06507.12Auxin_resp275367

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0005634nucleus
GO:0006355regulation of transcription, DNA-dependent
GO:0009725response to hormone stimulus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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