PH01000014G1340's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G06005 : 1.60E-83
Blast annotation: FRIGIDA interacting protein 1
2.Location
Scaffold: PH01000014
Strand: -
| Region | Start | End |
| gene | 984663 | 994216 |
| mRNA | 984663 | 994216 |
| exon | 984663 | 985382 |
| exon | 985470 | 985532 |
| exon | 985654 | 985746 |
| exon | 986067 | 986126 |
| exon | 986267 | 986326 |
| exon | 987725 | 987806 |
| exon | 988221 | 988317 |
| exon | 988840 | 988895 |
| exon | 989464 | 989574 |
| exon | 989766 | 989816 |
| exon | 990025 | 990097 |
| exon | 990460 | 990526 |
| exon | 991633 | 991787 |
| exon | 991997 | 992046 |
| exon | 993852 | 994216 |
| CDS | 985284 | 985382 |
| CDS | 985470 | 985532 |
| CDS | 985654 | 985746 |
| CDS | 986067 | 986126 |
| CDS | 986267 | 986326 |
| CDS | 987725 | 987806 |
| CDS | 988221 | 988317 |
| CDS | 988840 | 988895 |
| CDS | 989464 | 989574 |
| CDS | 989766 | 989816 |
| CDS | 990025 | 990097 |
| CDS | 990460 | 990526 |
| CDS | 991633 | 991787 |
| CDS | 991997 | 992046 |
| CDS | 993852 | 993916 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001019 | protein transport, |
| coexpression network | CFinderM001086 | Pantothenate_and_CoA_biosynthesis tRNA processing, methyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.