PH01000015G0810's details annotation
1.Annotation
ICBR annotation: aspartic proteinase, putative, expressed
Blast result AT1G25510 : 3.10E-47
Blast annotation: Eukaryotic aspartyl protease family protein
2.Location
Scaffold: PH01000015
Strand: +
| Region | Start | End |
| gene | 511303 | 513469 |
| mRNA | 511303 | 513469 |
| exon | 511303 | 513469 |
| CDS | 512552 | 512950 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000067 | GT57 GlycosylTransferases mitochondrial_respiratory_chain_complex_III endoplasmic reticulum membrane, methylation, mitochondrial electron transport, ubiquinol to cytochrome c, N-Glycan_biosynthesis Oxidative_phosphorylation nucleobase-containing compound metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14541.5 | TAXi_C | 2 | 128 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.