PH01000016G1040's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G13970 : 4.60E-37
Blast annotation: -
2.Location
Scaffold: PH01000016
Strand: +
| Region | Start | End |
| gene | 828598 | 831653 |
| mRNA | 828598 | 831653 |
| exon | 828598 | 830088 |
| exon | 830728 | 831653 |
| CDS | 829627 | 830088 |
| CDS | 830728 | 831615 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000520 | ER_membrane_protein_complex GT96 GlycosylTransferases TKL-Pl-4 (from iTAK) |
| coexpression network | CFinderM000933 | TKL-Pl-4 (from iTAK) Others Transcription_Regulator(from iTAK) response to heat, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15264.5 | TSSC4 | 294 | 350 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.