PH01000017G1610's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative
Blast result AT4G33170 : 1.40E-46
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000017
Strand: -
| Region | Start | End |
| gene | 1089158 | 1096425 |
| mRNA | 1089158 | 1096425 |
| exon | 1089158 | 1089283 |
| exon | 1089579 | 1089630 |
| exon | 1089720 | 1089821 |
| exon | 1090218 | 1090312 |
| exon | 1090524 | 1090649 |
| exon | 1091325 | 1091415 |
| exon | 1092085 | 1092153 |
| exon | 1092272 | 1092340 |
| exon | 1095129 | 1095596 |
| exon | 1095722 | 1096425 |
| CDS | 1089279 | 1089283 |
| CDS | 1089579 | 1089630 |
| CDS | 1089720 | 1089821 |
| CDS | 1090218 | 1090312 |
| CDS | 1090524 | 1090649 |
| CDS | 1091325 | 1091415 |
| CDS | 1092085 | 1092153 |
| CDS | 1092272 | 1092340 |
| CDS | 1095129 | 1095596 |
| CDS | 1095722 | 1096003 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 16 | 62 |
| PF14432.5 | DYW_deaminase | 149 | 250 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.