PH01000019G0810's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G47490 : 0.00E+00
Blast annotation: RGPR-related
2.Location
Scaffold: PH01000019
Strand: +
| Region | Start | End |
| gene | 620671 | 629824 |
| mRNA | 620671 | 629824 |
| exon | 620671 | 622812 |
| exon | 622910 | 623233 |
| exon | 624160 | 624288 |
| exon | 624363 | 624485 |
| exon | 624600 | 624767 |
| exon | 625273 | 625398 |
| exon | 625483 | 625617 |
| exon | 625843 | 625970 |
| exon | 626059 | 626170 |
| exon | 626303 | 626629 |
| exon | 626751 | 626867 |
| exon | 626978 | 627273 |
| exon | 627369 | 629824 |
| CDS | 620962 | 622812 |
| CDS | 622910 | 623233 |
| CDS | 624160 | 624288 |
| CDS | 624363 | 624485 |
| CDS | 624600 | 624767 |
| CDS | 625273 | 625398 |
| CDS | 625483 | 625617 |
| CDS | 625843 | 625970 |
| CDS | 626059 | 626170 |
| CDS | 626303 | 626629 |
| CDS | 626751 | 626867 |
| CDS | 626978 | 627273 |
| CDS | 627369 | 627915 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12932.6 | Sec16 | 588 | 712 |
| PF12931.6 | Sec16_C | 774 | 1058 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0048208 | COPII vesicle coating |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.