PH01000019G2500's details annotation
1.Annotation
ICBR annotation: AGAP001222-PA, putative, expressed
Blast result AT1G63855 : 5.90E-60
Blast annotation: Putative methyltransferase family protein
2.Location
Scaffold: PH01000019
Strand: +
| Region | Start | End |
| gene | 1812151 | 1815561 |
| mRNA | 1812151 | 1815561 |
| exon | 1812151 | 1813797 |
| exon | 1814048 | 1814233 |
| exon | 1814416 | 1814457 |
| exon | 1814656 | 1814706 |
| exon | 1814787 | 1814880 |
| exon | 1814999 | 1815026 |
| exon | 1815202 | 1815561 |
| CDS | 1813648 | 1813797 |
| CDS | 1814048 | 1814233 |
| CDS | 1814416 | 1814457 |
| CDS | 1814656 | 1814706 |
| CDS | 1814787 | 1814880 |
| CDS | 1814999 | 1815026 |
| CDS | 1815202 | 1815358 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.