PH01000021G0050's details annotation
1.Annotation
ICBR annotation: methionine adenosyltransferase regulatory beta subunit-related, putative, expressed
Blast result AT4G00560 : 6.00E-52
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01000021
Strand: -
| Region | Start | End |
| gene | 19492 | 24521 |
| mRNA | 19492 | 24521 |
| exon | 19492 | 19562 |
| exon | 19721 | 19751 |
| exon | 20969 | 21020 |
| exon | 21206 | 21329 |
| exon | 21501 | 21688 |
| exon | 23728 | 23833 |
| exon | 24050 | 24521 |
| CDS | 19539 | 19562 |
| CDS | 19721 | 19751 |
| CDS | 20969 | 21020 |
| CDS | 21206 | 21329 |
| CDS | 21501 | 21688 |
| CDS | 23728 | 23833 |
| CDS | 24050 | 24274 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04321.16 | RmlD_sub_bind | 116 | 214 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008831 | dTDP-4-dehydrorhamnose reductase activity |
| GO:0045226 | extracellular polysaccharide biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.