Annotation of co-expression genes

PH01000021G1320's details annotation

1.Annotation

ICBR annotation: protein kinase APK1A, chloroplast precursor, putative, expressed

Blast result AT3G09830 : 4.00E-142
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01000021
Strand: +

RegionStartEnd
gene773952779462
mRNA773952779462
exon773952775268
exon776120776380
exon776524776646
exon777308779462
CDS775002775268
CDS776120776380
CDS776524776646
CDS777308777829

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000615cellular protein metabolic process,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
protein methylation,
protein refolding,
RNA_degradation
coexpression networkCFinderM000622exocyst,
SOS_response
DNA-dependent ATPase activity,
single-stranded DNA binding,
DNA metabolic process,
exocytosis,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
NAC Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07714.16Pkinase_Tyr89363

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.