PH01000026G2310's details annotation
1.Annotation
ICBR annotation: rho termination factor, N-terminal domain containing protein, expressed
Blast result AT1G06190 : 6.50E-42
Blast annotation: Rho termination factor
2.Location
Scaffold: PH01000026
Strand: +
| Region | Start | End |
| gene | 1691353 | 1696672 |
| mRNA | 1691353 | 1696672 |
| exon | 1691353 | 1691791 |
| exon | 1694108 | 1696672 |
| CDS | 1691583 | 1691791 |
| CDS | 1694108 | 1695302 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07498.11 | Rho_N | 346 | 374 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006353 | DNA-dependent transcription, termination |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.