PH01000029G2170's details annotation
1.Annotation
ICBR annotation: EAP30/Vps36 family domain containing protein, expressed
Blast result AT5G04920 : 3.00E-105
Blast annotation: EAP30/Vps36 family protein
2.Location
Scaffold: PH01000029
Strand: -
| Region | Start | End |
| gene | 1452972 | 1457140 |
| mRNA | 1452972 | 1457140 |
| exon | 1452972 | 1453508 |
| exon | 1454237 | 1454372 |
| exon | 1454697 | 1454766 |
| exon | 1454938 | 1454995 |
| exon | 1455078 | 1455171 |
| exon | 1455681 | 1455881 |
| exon | 1456025 | 1457140 |
| CDS | 1453399 | 1453508 |
| CDS | 1454237 | 1454372 |
| CDS | 1454697 | 1454766 |
| CDS | 1454938 | 1454995 |
| CDS | 1455078 | 1455171 |
| CDS | 1455681 | 1455881 |
| CDS | 1456025 | 1456651 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04157.15 | EAP30 | 178 | 400 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | ESCRT-II complex subunit VPS36 | ko04144 | K12190 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0032266 | phosphatidylinositol-3-phosphate binding |
| GO:0043130 | ubiquitin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.