PH01000029G2540's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT5G17790 : 9.50E-83
Blast annotation: zinc finger (Ran-binding) family protein
2.Location
Scaffold: PH01000029
Strand: +
| Region | Start | End |
| gene | 1691548 | 1699091 |
| mRNA | 1691548 | 1699091 |
| exon | 1691548 | 1692262 |
| exon | 1692341 | 1692458 |
| exon | 1692823 | 1693439 |
| exon | 1694562 | 1694771 |
| exon | 1695223 | 1695321 |
| exon | 1695412 | 1697182 |
| exon | 1698111 | 1699091 |
| CDS | 1691850 | 1692262 |
| CDS | 1692341 | 1692458 |
| CDS | 1692823 | 1693439 |
| CDS | 1694562 | 1694771 |
| CDS | 1695223 | 1695321 |
| CDS | 1695412 | 1697182 |
| CDS | 1698111 | 1698344 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00641.17 | zf-RanBP | 446 | 473 |
| PF00641.17 | zf-RanBP | 480 | 506 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.