Annotation of co-expression genes

PH01000030G0210's details annotation

1.Annotation

ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed

Blast result AT5G16750 : 9.90E-46
Blast annotation: Transducin family protein / WD-40 repeat family protein

2.Location

Scaffold: PH01000030
Strand: +

RegionStartEnd
gene112289123554
mRNA112289123554
exon112289115722
exon116234116336
exon116640116717
exon117661117810
exon118326118517
exon119372119455
exon121018121090
exon121175121251
exon122046122134
exon122644122749
exon122897123554
CDS115538115722
CDS116234116336
CDS116640116717
CDS117661117810
CDS118326118517
CDS119372119455
CDS121018121090
CDS121175121251
CDS122046122134
CDS122644122749
CDS122897123196

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00400.31WD4095136
PF00400.31WD40141178
PF00400.31WD40265297
PF08625.10Utp13380418

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0006364rRNA processing
GO:0032040small-subunit processome

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.