PH01000033G2170's details annotation
1.Annotation
ICBR annotation: TBC domain containing protein, expressed
Blast result AT3G55020 : 1.00E-131
Blast annotation: Ypt/Rab-GAP domain of gyp1p superfamily protein
2.Location
Scaffold: PH01000033
Strand: +
| Region | Start | End |
| gene | 1408492 | 1414142 |
| mRNA | 1408492 | 1414142 |
| exon | 1408492 | 1408783 |
| exon | 1409370 | 1409439 |
| exon | 1409519 | 1410361 |
| exon | 1410460 | 1410639 |
| exon | 1410742 | 1410855 |
| exon | 1411306 | 1411364 |
| exon | 1411494 | 1411560 |
| exon | 1411633 | 1411684 |
| exon | 1412218 | 1412301 |
| exon | 1412435 | 1412829 |
| exon | 1413118 | 1413179 |
| exon | 1413964 | 1414142 |
| CDS | 1408749 | 1408783 |
| CDS | 1409370 | 1409439 |
| CDS | 1409519 | 1410361 |
| CDS | 1410460 | 1410639 |
| CDS | 1410742 | 1410855 |
| CDS | 1411306 | 1411364 |
| CDS | 1411494 | 1411560 |
| CDS | 1411633 | 1411684 |
| CDS | 1412218 | 1412301 |
| CDS | 1412435 | 1412829 |
| CDS | 1413118 | 1413179 |
| CDS | 1413964 | 1414057 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00566.17 | RabGAP-TBC | 312 | 473 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005097 | Rab GTPase activator activity |
| GO:0005622 | intracellular |
| GO:0032313 | regulation of Rab GTPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.