PH01000037G1560's details annotation
1.Annotation
ICBR annotation: ABC-2 type transporter domain containing protein, expressed
Blast result AT1G71960 : 9.00E-103
Blast annotation: ATP-binding casette family G25
2.Location
Scaffold: PH01000037
Strand: -
| Region | Start | End |
| gene | 1115821 | 1121136 |
| mRNA | 1115821 | 1121136 |
| exon | 1115821 | 1117240 |
| exon | 1118129 | 1118466 |
| exon | 1119837 | 1121136 |
| CDS | 1117058 | 1117240 |
| CDS | 1118129 | 1118466 |
| CDS | 1119837 | 1120719 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00005.26 | ABC_tran | 51 | 209 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005524 | ATP binding |
| GO:0016887 | ATPase activity |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.