PH01000038G0730's details annotation
1.Annotation
ICBR annotation: SAC domain containing protein, putative, expressed
Blast result AT3G14205 : 0.00E+00
Blast annotation: Phosphoinositide phosphatase family protein
2.Location
Scaffold: PH01000038
Strand: +
| Region | Start | End |
| gene | 548433 | 556992 |
| mRNA | 548433 | 556992 |
| exon | 548433 | 548601 |
| exon | 549317 | 549521 |
| exon | 549615 | 549780 |
| exon | 550430 | 550652 |
| exon | 552239 | 552315 |
| exon | 552419 | 552606 |
| exon | 552693 | 552787 |
| exon | 552970 | 553103 |
| exon | 553212 | 553325 |
| exon | 553730 | 554045 |
| exon | 554798 | 554919 |
| exon | 555037 | 555147 |
| exon | 555729 | 555947 |
| exon | 556038 | 556196 |
| exon | 556333 | 556414 |
| exon | 556613 | 556992 |
| CDS | 548542 | 548601 |
| CDS | 549317 | 549521 |
| CDS | 549615 | 549780 |
| CDS | 550430 | 550652 |
| CDS | 552239 | 552315 |
| CDS | 552419 | 552606 |
| CDS | 552693 | 552787 |
| CDS | 552970 | 553103 |
| CDS | 553212 | 553325 |
| CDS | 553730 | 554045 |
| CDS | 554798 | 554919 |
| CDS | 555037 | 555147 |
| CDS | 555729 | 555947 |
| CDS | 556038 | 556196 |
| CDS | 556333 | 556414 |
| CDS | 556613 | 556723 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001271 | RLK-Pelle_LysM (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02383.17 | Syja_N | 85 | 379 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0042578 | phosphoric ester hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.