PH01000040G2100's details annotation
1.Annotation
ICBR annotation: FG-GAP repeat-containing protein, putative, expressed
Blast result AT3G09090 : 0.00E+00
Blast annotation: defective in exine formation protein (DEX1)
2.Location
Scaffold: PH01000040
Strand: -
| Region | Start | End |
| gene | 1365617 | 1372840 |
| mRNA | 1365617 | 1372840 |
| exon | 1365617 | 1366097 |
| exon | 1366186 | 1366368 |
| exon | 1366589 | 1367061 |
| exon | 1367436 | 1367639 |
| exon | 1367957 | 1368213 |
| exon | 1368825 | 1368895 |
| exon | 1368983 | 1369470 |
| exon | 1369796 | 1370007 |
| exon | 1370091 | 1370208 |
| exon | 1370456 | 1370538 |
| exon | 1370955 | 1371065 |
| exon | 1371248 | 1371349 |
| exon | 1372492 | 1372840 |
| CDS | 1365783 | 1366097 |
| CDS | 1366186 | 1366368 |
| CDS | 1366589 | 1367061 |
| CDS | 1367436 | 1367639 |
| CDS | 1367957 | 1368213 |
| CDS | 1368825 | 1368895 |
| CDS | 1368983 | 1369470 |
| CDS | 1369796 | 1370007 |
| CDS | 1370091 | 1370208 |
| CDS | 1370456 | 1370538 |
| CDS | 1370955 | 1371065 |
| CDS | 1371248 | 1371349 |
| CDS | 1372492 | 1372634 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000520 | ER_membrane_protein_complex GT96 GlycosylTransferases TKL-Pl-4 (from iTAK) |
| coexpression network | CFinderM000802 | bZIP Transcription_Regulator(from PlantTFDB) CMGC_CDK-CDK8 (from iTAK) RNA_degradation Plant_hormone_signal_transduction regulation of transcription, DNA-dependent, sequence-specific DNA binding, |
| coexpression network | CFinderM001644 | ER_membrane_protein_complex RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.