Annotation of co-expression genes

PH01000042G0880's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, expressed

Blast result AT2G44710 : 2.00E-174
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein

2.Location

Scaffold: PH01000042
Strand: -

RegionStartEnd
gene552095557662
mRNA552095557662
exon552095552290
exon552426552597
exon553583553659
exon553754553848
exon553934554043
exon554143554465
exon554555554861
exon554983555204
exon555390555629
exon555710555799
exon555880556409
exon556915557662
CDS552256552290
CDS552426552597
CDS553583553659
CDS553754553848
CDS553934554043
CDS554143554465
CDS554555554861
CDS554983555204
CDS555390555629
CDS555710555799
CDS555880556409
CDS556915557167

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_1198266
PF00076.21RRM_1278344
PF00076.21RRM_1375433

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.