PH01000043G1330's details annotation
1.Annotation
ICBR annotation: ubiquitin fusion degradation protein, putative, expressed
Blast result AT2G21270 : 3.00E-117
Blast annotation: ubiquitin fusion degradation 1
2.Location
Scaffold: PH01000043
Strand: +
| Region | Start | End |
| gene | 971720 | 977643 |
| mRNA | 971720 | 977643 |
| exon | 971720 | 972097 |
| exon | 972127 | 972305 |
| exon | 973052 | 973154 |
| exon | 973934 | 973971 |
| exon | 974394 | 974471 |
| exon | 975104 | 975128 |
| exon | 975212 | 975244 |
| exon | 975380 | 975501 |
| exon | 975585 | 975715 |
| exon | 975868 | 976091 |
| exon | 976175 | 976416 |
| exon | 976599 | 977643 |
| CDS | 971995 | 972097 |
| CDS | 972127 | 972305 |
| CDS | 973052 | 973154 |
| CDS | 973934 | 973971 |
| CDS | 974394 | 974471 |
| CDS | 975104 | 975128 |
| CDS | 975212 | 975244 |
| CDS | 975380 | 975501 |
| CDS | 975585 | 975715 |
| CDS | 975868 | 976091 |
| CDS | 976175 | 976416 |
| CDS | 976599 | 976688 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03152.13 | UFD1 | 153 | 324 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | ubiquitin fusion degradation protein 1 | ko04141 | K14016 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.