PH01000043G1520's details annotation
1.Annotation
ICBR annotation: protein kinase family protein, putative, expressed
Blast result AT4G32000 : 1.00E-134
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000043
Strand: -
| Region | Start | End |
| gene | 1098105 | 1101530 |
| mRNA | 1098105 | 1101530 |
| exon | 1098105 | 1098569 |
| exon | 1098650 | 1098739 |
| exon | 1098912 | 1099030 |
| exon | 1099138 | 1099240 |
| exon | 1099350 | 1099446 |
| exon | 1099541 | 1099604 |
| exon | 1099709 | 1099841 |
| exon | 1099934 | 1100178 |
| exon | 1100282 | 1100446 |
| exon | 1101100 | 1101530 |
| CDS | 1098405 | 1098569 |
| CDS | 1098650 | 1098739 |
| CDS | 1098912 | 1099030 |
| CDS | 1099138 | 1099240 |
| CDS | 1099350 | 1099446 |
| CDS | 1099541 | 1099604 |
| CDS | 1099709 | 1099841 |
| CDS | 1099934 | 1100178 |
| CDS | 1100282 | 1100446 |
| CDS | 1101100 | 1101319 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 169 | 436 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.