PH01000044G0320's details annotation
1.Annotation
ICBR annotation: RING finger protein 13, putative, expressed
Blast result AT1G71980 : 6.10E-39
Blast annotation: Protease-associated (PA) RING/U-box zinc finger family protein
2.Location
Scaffold: PH01000044
Strand: -
| Region | Start | End |
| gene | 220826 | 226769 |
| mRNA | 220826 | 226769 |
| exon | 220826 | 223167 |
| exon | 223460 | 223523 |
| exon | 224052 | 224161 |
| exon | 224548 | 224772 |
| exon | 225146 | 226769 |
| CDS | 222404 | 223167 |
| CDS | 223460 | 223523 |
| CDS | 224052 | 224161 |
| CDS | 224548 | 224772 |
| CDS | 225146 | 225287 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02225.21 | PA | 74 | 149 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.