PH01000046G0520's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G30890 : 2.90E-53
Blast annotation: Cytochrome b561/ferric reductase transmembrane protein family
2.Location
Scaffold: PH01000046
Strand: +
| Region | Start | End |
| gene | 414528 | 424419 |
| mRNA | 414528 | 424419 |
| exon | 414528 | 415138 |
| exon | 415181 | 415328 |
| exon | 416260 | 416343 |
| exon | 416477 | 416560 |
| exon | 418019 | 418294 |
| exon | 418697 | 418768 |
| exon | 419140 | 419189 |
| exon | 419935 | 420040 |
| exon | 421863 | 421922 |
| exon | 422048 | 422209 |
| exon | 422296 | 422444 |
| exon | 422542 | 424419 |
| CDS | 414813 | 415138 |
| CDS | 415181 | 415328 |
| CDS | 416260 | 416343 |
| CDS | 416477 | 416560 |
| CDS | 418019 | 418294 |
| CDS | 418697 | 418768 |
| CDS | 419140 | 419189 |
| CDS | 419935 | 420040 |
| CDS | 421863 | 421922 |
| CDS | 422048 | 422209 |
| CDS | 422296 | 422444 |
| CDS | 422542 | 422836 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01775.16 | Ribosomal_L18A | 209 | 277 |
| PF03188.15 | Cytochrom_B561 | 413 | 538 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.