PH01000046G1830's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G64385 : 2.40E-13
Blast annotation: -
2.Location
Scaffold: PH01000046
Strand: -
| Region | Start | End |
| gene | 1321728 | 1327062 |
| mRNA | 1321728 | 1327062 |
| exon | 1321728 | 1322175 |
| exon | 1322682 | 1322773 |
| exon | 1323582 | 1323939 |
| exon | 1325084 | 1325146 |
| exon | 1326040 | 1327062 |
| CDS | 1321741 | 1322175 |
| CDS | 1322682 | 1322773 |
| CDS | 1323582 | 1323939 |
| CDS | 1325084 | 1325146 |
| CDS | 1326040 | 1326099 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000504 | cytoplasm, microtubule associated complex, Pyruvate_metabolism Fatty_acid_biosynthesis Glycine,_serine_and_threonine_metabolism Valine,_leucine_and_isoleucine_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.