PH01000047G0550's details annotation
1.Annotation
ICBR annotation: IQ calmodulin-binding motif family protein, putative, expressed
Blast result AT5G13460 : 4.70E-30
Blast annotation: IQ-domain 11
2.Location
Scaffold: PH01000047
Strand: +
| Region | Start | End |
| gene | 413725 | 417652 |
| mRNA | 413725 | 417652 |
| exon | 413725 | 414734 |
| exon | 414816 | 415121 |
| exon | 415456 | 415662 |
| exon | 416510 | 416619 |
| exon | 416929 | 417136 |
| exon | 417223 | 417652 |
| CDS | 414651 | 414734 |
| CDS | 414816 | 415121 |
| CDS | 415456 | 415662 |
| CDS | 416510 | 416619 |
| CDS | 416929 | 417136 |
| CDS | 417223 | 417591 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00612.26 | IQ | 117 | 136 |
| PF13178.5 | DUF4005 | 308 | 346 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.