PH01000049G0050's details annotation
1.Annotation
ICBR annotation: serine hydrolase domain containing protein, expressed
Blast result AT3G43810 : 5.30E-81
Blast annotation: calmodulin 7
2.Location
Scaffold: PH01000049
Strand: +
| Region | Start | End |
| gene | 20895 | 25907 |
| mRNA | 20895 | 25907 |
| exon | 20895 | 21244 |
| exon | 23698 | 25907 |
| CDS | 21169 | 21244 |
| CDS | 23698 | 24071 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000614 | protein processing, ATP biosynthetic process, ATP_catabolic_process plant-type cell wall organization, GH28 Glycoside_Hydrolases extracellular region, integral to membrane, Phosphatidylinositol_signaling_system Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13499.5 | EF-hand_7 | 13 | 73 |
| PF13499.5 | EF-hand_7 | 83 | 146 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Phosphatidylinositol signaling system | calmodulin | ko04070 | K02183 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.