PH01000054G1390's details annotation
1.Annotation
ICBR annotation: clathrin adaptor complex small chain domain containing protein, expressed
Blast result AT3G09800 : 3.60E-46
Blast annotation: SNARE-like superfamily protein
2.Location
Scaffold: PH01000054
Strand: -
| Region | Start | End |
| gene | 841406 | 846239 |
| mRNA | 841406 | 846239 |
| exon | 841406 | 841554 |
| exon | 841633 | 841717 |
| exon | 842315 | 842392 |
| exon | 842512 | 842584 |
| exon | 843457 | 843616 |
| exon | 844236 | 846239 |
| CDS | 841498 | 841554 |
| CDS | 841633 | 841717 |
| CDS | 842315 | 842392 |
| CDS | 842512 | 842584 |
| CDS | 843457 | 843616 |
| CDS | 844236 | 844292 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01217.19 | Clat_adaptor_s | 74 | 138 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006810 | transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.