PH01000054G2270's details annotation
1.Annotation
ICBR annotation: SAC3/GANP family protein, putative, expressed
Blast result AT2G39340 : 0.00E+00
Blast annotation: SAC3/GANP/Nin1/mts3/eIF-3 p25 family
2.Location
Scaffold: PH01000054
Strand: -
| Region | Start | End |
| gene | 1317577 | 1328510 |
| mRNA | 1317577 | 1328510 |
| exon | 1317577 | 1318270 |
| exon | 1318357 | 1318586 |
| exon | 1318687 | 1318820 |
| exon | 1318913 | 1319043 |
| exon | 1319630 | 1319689 |
| exon | 1319922 | 1320062 |
| exon | 1320198 | 1320665 |
| exon | 1320798 | 1320975 |
| exon | 1321819 | 1321922 |
| exon | 1322377 | 1322475 |
| exon | 1322829 | 1323035 |
| exon | 1323114 | 1323353 |
| exon | 1324462 | 1325283 |
| exon | 1326773 | 1328510 |
| CDS | 1318172 | 1318270 |
| CDS | 1318357 | 1318586 |
| CDS | 1318687 | 1318820 |
| CDS | 1318913 | 1319043 |
| CDS | 1319630 | 1319689 |
| CDS | 1319922 | 1320062 |
| CDS | 1320198 | 1320665 |
| CDS | 1320798 | 1320975 |
| CDS | 1321819 | 1321922 |
| CDS | 1322377 | 1322475 |
| CDS | 1322829 | 1323035 |
| CDS | 1323114 | 1323353 |
| CDS | 1324462 | 1325283 |
| CDS | 1326773 | 1326826 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000352 | Ribosome translation, Ribosome intracellular, structural constituent of ribosome, translational initiation, transcription, DNA-dependent, RNA_polymerase |
| coexpression network | CFinderM001353 | TKL-Pl-7 (from iTAK) Others Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03399.15 | SAC3_GANP | 711 | 922 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.