PH01000055G0740's details annotation
1.Annotation
ICBR annotation: sucrose-phosphate synthase, putative, expressed
Blast result AT4G10120 : 2.00E-141
Blast annotation: Sucrose-phosphate synthase family protein
2.Location
Scaffold: PH01000055
Strand: +
| Region | Start | End |
| gene | 586433 | 589421 |
| mRNA | 586433 | 589421 |
| exon | 586433 | 587002 |
| exon | 587081 | 587212 |
| exon | 587322 | 587498 |
| exon | 587531 | 587617 |
| exon | 587780 | 588010 |
| exon | 588355 | 588627 |
| exon | 588723 | 588850 |
| exon | 588940 | 589421 |
| CDS | 586583 | 587002 |
| CDS | 587081 | 587212 |
| CDS | 587322 | 587498 |
| CDS | 587531 | 587617 |
| CDS | 587780 | 588010 |
| CDS | 588355 | 588627 |
| CDS | 588723 | 588850 |
| CDS | 588940 | 589198 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00534.19 | Glycos_transf_1 | 147 | 330 |
| PF05116.12 | S6PP | 365 | 509 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009058 | biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.