PH01000068G0390's details annotation
1.Annotation
ICBR annotation: ZOS7-13 - C2H2 zinc finger protein, expressed
Blast result AT3G12260 : 3.60E-21
Blast annotation: LYR family of Fe/S cluster biogenesis protein
2.Location
Scaffold: PH01000068
Strand: -
| Region | Start | End |
| gene | 285543 | 292971 |
| mRNA | 285543 | 292971 |
| exon | 285543 | 286157 |
| exon | 287625 | 287679 |
| exon | 290684 | 291117 |
| exon | 292598 | 292971 |
| CDS | 285972 | 286157 |
| CDS | 287625 | 287679 |
| CDS | 290684 | 291117 |
| CDS | 292598 | 292729 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001094 | Ribosome translation, protein methylation, structural constituent of ribosome, intracellular, methyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006479 | protein methylation |
| GO:0008168 | methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.