PH01000068G1680's details annotation
1.Annotation
ICBR annotation: 4-alpha-glucanotransferase, chloroplast precursor, putative, expressed
Blast result AT5G64860 : 4.00E-154
Blast annotation: disproportionating enzyme
2.Location
Scaffold: PH01000068
Strand: -
| Region | Start | End |
| gene | 1164642 | 1173661 |
| mRNA | 1164642 | 1173661 |
| exon | 1164642 | 1165149 |
| exon | 1166184 | 1166271 |
| exon | 1166363 | 1166506 |
| exon | 1168963 | 1169115 |
| exon | 1169353 | 1169441 |
| exon | 1169556 | 1169628 |
| exon | 1169937 | 1170011 |
| exon | 1170079 | 1170134 |
| exon | 1170259 | 1170398 |
| exon | 1170496 | 1170572 |
| exon | 1170914 | 1171050 |
| exon | 1171351 | 1171411 |
| exon | 1171948 | 1172008 |
| exon | 1172091 | 1172179 |
| exon | 1172308 | 1172370 |
| exon | 1173128 | 1173661 |
| CDS | 1165142 | 1165149 |
| CDS | 1166184 | 1166271 |
| CDS | 1166363 | 1166506 |
| CDS | 1168963 | 1169115 |
| CDS | 1169353 | 1169441 |
| CDS | 1169556 | 1169628 |
| CDS | 1169937 | 1170011 |
| CDS | 1170079 | 1170134 |
| CDS | 1170259 | 1170398 |
| CDS | 1170496 | 1170572 |
| CDS | 1170914 | 1171050 |
| CDS | 1171351 | 1171411 |
| CDS | 1171948 | 1172008 |
| CDS | 1172091 | 1172179 |
| CDS | 1172308 | 1172370 |
| CDS | 1173128 | 1173349 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH77 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02446.16 | Glyco_hydro_77 | 210 | 432 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | 4-alpha-glucanotransferase [EC:2.4.1.25] | ko00500 | K00705 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004134 | 4-alpha-glucanotransferase activity |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.