PH01000083G1080's details annotation
1.Annotation
ICBR annotation: callose synthase, putative, expressed
Blast result AT2G36850 : 3.00E-128
Blast annotation: glucan synthase-like 8
2.Location
Scaffold: PH01000083
Strand: +
| Region | Start | End |
| gene | 666242 | 673040 |
| mRNA | 666242 | 673040 |
| exon | 666242 | 666390 |
| exon | 668634 | 668686 |
| exon | 670017 | 670064 |
| exon | 670193 | 670351 |
| exon | 670436 | 670549 |
| exon | 670619 | 670707 |
| exon | 671155 | 671313 |
| exon | 671671 | 671773 |
| exon | 671879 | 671998 |
| exon | 672271 | 672358 |
| exon | 672482 | 673040 |
| CDS | 666282 | 666390 |
| CDS | 668634 | 668686 |
| CDS | 670017 | 670064 |
| CDS | 670193 | 670351 |
| CDS | 670436 | 670549 |
| CDS | 670619 | 670707 |
| CDS | 671155 | 671313 |
| CDS | 671671 | 671773 |
| CDS | 671879 | 671998 |
| CDS | 672271 | 672358 |
| CDS | 672482 | 672609 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02364.14 | Glucan_synthase | 56 | 289 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000148 | 1,3-beta-D-glucan synthase complex |
| GO:0003843 | 1,3-beta-D-glucan synthase activity |
| GO:0006075 | (1->3)-beta-D-glucan biosynthetic process |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.