PH01000090G0270's details annotation
1.Annotation
ICBR annotation: hhH-GPD superfamily base excision DNA repair protein
Blast result AT5G04560 : 1.60E-75
Blast annotation: HhH-GPD base excision DNA repair family protein
2.Location
Scaffold: PH01000090
Strand: -
| Region | Start | End |
| gene | 134450 | 143466 |
| mRNA | 134450 | 143466 |
| exon | 134450 | 135757 |
| exon | 136549 | 136631 |
| exon | 136724 | 136760 |
| exon | 137216 | 137307 |
| exon | 137420 | 137504 |
| exon | 137775 | 137854 |
| exon | 138059 | 138408 |
| exon | 138743 | 139617 |
| exon | 139734 | 139824 |
| exon | 140475 | 143466 |
| CDS | 135319 | 135757 |
| CDS | 136549 | 136631 |
| CDS | 136724 | 136760 |
| CDS | 137216 | 137307 |
| CDS | 137420 | 137504 |
| CDS | 137775 | 137854 |
| CDS | 138059 | 138408 |
| CDS | 138743 | 139617 |
| CDS | 139734 | 139824 |
| CDS | 140475 | 143193 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000256 | signal recognition particle, proton-transporting two-sector ATPase complex, proton-transporting domain, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004519 | endonuclease activity |
| GO:0006281 | DNA repair |
| GO:0006284 | base-excision repair |
| GO:0051539 | 4 iron, 4 sulfur cluster binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.