Annotation of co-expression genes

PH01000093G0980's details annotation

1.Annotation

ICBR annotation: galactosyltransferase, putative, expressed

Blast result AT1G05170 : 1.00E-160
Blast annotation: Galactosyltransferase family protein

2.Location

Scaffold: PH01000093
Strand: -

RegionStartEnd
gene618018622982
mRNA618018622982
exon618018618490
exon618664618773
exon618878619003
exon619077619164
exon619455619575
exon619700619772
exon620729620792
exon620896621107
exon621212621273
exon621451621547
exon622167622982
CDS618342618490
CDS618664618773
CDS618878619003
CDS619077619164
CDS619455619575
CDS619700619772
CDS620729620792
CDS620896621107
CDS621212621273
CDS621451621547
CDS622167622267

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000792GT31 GlycosylTransferases
fatty-acyl-CoA binding,
coexpression networkCFinderM001652mRNA_cleavage_factor_complex
GT31 GlycosylTransferases
mRNA_polyadenylation
mRNA_binding
mRNA_surveillance_pathway
protein glycosylation,
cellulose biosynthetic process,
membrane,
coexpression networkCFinderM001742GT31 GlycosylTransferases
Basal_transcription_factors
fatty-acyl-CoA binding,
TBP-class_protein_binding
ubiquitin-dependent protein catabolic process,
protein glycosylation,
galactosyltransferase activity,
ubiquitin thiolesterase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT31

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13334.5DUF409413105
PF01762.20Galactosyl_T145342

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006486protein glycosylation
GO:0008378galactosyltransferase activity
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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