PH01000093G1350's details annotation
1.Annotation
ICBR annotation: peroxidase precursor, putative, expressed
Blast result AT4G11290 : 2.50E-99
Blast annotation: Peroxidase superfamily protein
2.Location
Scaffold: PH01000093
Strand: +
| Region | Start | End |
| gene | 837857 | 840399 |
| mRNA | 837857 | 840399 |
| exon | 837857 | 838196 |
| exon | 838277 | 838468 |
| exon | 838546 | 838708 |
| exon | 839686 | 840399 |
| CDS | 837984 | 838196 |
| CDS | 838277 | 838468 |
| CDS | 838546 | 838708 |
| CDS | 839686 | 840107 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000041 | Oxidative_phosphorylation respiratory electron transport chain, mitochondrial inner membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00141.22 | peroxidase | 46 | 282 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004601 | peroxidase activity |
| GO:0006979 | response to oxidative stress |
| GO:0020037 | heme binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.