PH01000108G1180's details annotation
1.Annotation
ICBR annotation: presenilin, putative, expressed
Blast result AT1G08700 : 4.80E-70
Blast annotation: Presenilin-1
2.Location
Scaffold: PH01000108
Strand: -
| Region | Start | End |
| gene | 886065 | 889123 |
| mRNA | 886065 | 889123 |
| exon | 886065 | 889123 |
| CDS | 887072 | 888442 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000624 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, HB-other Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000705 | HB-other Transcription_Regulator(from PlantTFDB) Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001796 | HB-other Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001876 | Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01080.16 | Presenilin | 26 | 446 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.