PH01000113G0180's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result AT5G56310 : 1.30E-70
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01000113
Strand: +
| Region | Start | End |
| gene | 130684 | 133369 |
| mRNA | 130684 | 133369 |
| exon | 130684 | 132302 |
| exon | 132561 | 132632 |
| exon | 132837 | 133369 |
| CDS | 130799 | 132302 |
| CDS | 132561 | 132632 |
| CDS | 132837 | 132877 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000204 | CMGC_CLK (from iTAK) histone deacetylation, ubiquitin ligase complex, histone deacetylase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 129 | 156 |
| PF01535.19 | PPR | 204 | 230 |
| PF01535.19 | PPR | 233 | 258 |
| PF13041.5 | PPR_2 | 262 | 305 |
| PF01535.19 | PPR | 334 | 359 |
| PF01535.19 | PPR | 363 | 391 |
| PF01535.19 | PPR | 399 | 426 |
| PF01535.19 | PPR | 438 | 462 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.