PH01000113G1370's details annotation
1.Annotation
ICBR annotation: nuclear transcription factor Y subunit, putative, expressed
Blast result AT3G14020 : 4.90E-32
Blast annotation: nuclear factor Y, subunit A6
2.Location
Scaffold: PH01000113
Strand: -
| Region | Start | End |
| gene | 890613 | 893954 |
| mRNA | 890613 | 893954 |
| exon | 890613 | 891136 |
| exon | 891299 | 891472 |
| exon | 891872 | 891940 |
| exon | 892043 | 892155 |
| exon | 892340 | 892508 |
| exon | 892974 | 893954 |
| CDS | 890888 | 891136 |
| CDS | 891299 | 891472 |
| CDS | 891872 | 891940 |
| CDS | 892043 | 892155 |
| CDS | 892340 | 892508 |
| CDS | 892974 | 893009 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | NF-YA |
| Transcription_Regulator(from PlantTFDB) | NF-YA |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02045.14 | CBFB_NFYA | 154 | 209 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0016602 | CCAAT-binding factor complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.