Annotation of co-expression genes

PH01000118G1190's details annotation

1.Annotation

ICBR annotation: 60S ribosomal protein L23A, putative, expressed

Blast result AT3G55280 : 1.00E-45
Blast annotation: ribosomal protein L23AB

2.Location

Scaffold: PH01000118
Strand: +

RegionStartEnd
gene773146775571
mRNA773146775571
exon773146773636
exon774104775571
CDS773624773636
CDS774104774627

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001689Ribosome
translation,
Jumonji Transcription_Regulator(from iTAK)
structural constituent of ribosome,
Ribosome
small ribosomal subunit,
intracellular,
coexpression networkCFinderM001835MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
nuclear chromosome,
chromatin binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03939.12Ribosomal_L23eN1462
PF00276.19Ribosomal_L2372133

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ribosomelarge subunit ribosomal protein L23Aeko03011K02893

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003735structural constituent of ribosome
GO:0005622intracellular
GO:0005840ribosome
GO:0006412translation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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