PH01000119G0600's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, expressed
Blast result AT2G24590 : 3.60E-37
Blast annotation: RNA recognition motif and CCHC-type zinc finger domains containing protein
2.Location
Scaffold: PH01000119
Strand: -
| Region | Start | End |
| gene | 437809 | 444764 |
| mRNA | 437809 | 444764 |
| exon | 437809 | 439129 |
| exon | 439576 | 439664 |
| exon | 440415 | 440521 |
| exon | 441068 | 441421 |
| exon | 442263 | 442341 |
| exon | 442430 | 442473 |
| exon | 443526 | 444764 |
| CDS | 438885 | 439129 |
| CDS | 439576 | 439664 |
| CDS | 440415 | 440521 |
| CDS | 441068 | 441421 |
| CDS | 442263 | 442341 |
| CDS | 442430 | 442473 |
| CDS | 443526 | 443783 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 255 | 312 |
| PF00098.22 | zf-CCHC | 339 | 354 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | splicing factor, arginine/serine-rich 7 | ko03041 | K12896 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.