Annotation of co-expression genes

PH01000120G1450's details annotation

1.Annotation

ICBR annotation: copper-transporting ATPase, putative, expressed

Blast result AT1G63440 : 0.00E+00
Blast annotation: heavy metal atpase 5

2.Location

Scaffold: PH01000120
Strand: -

RegionStartEnd
gene900217907586
mRNA900217907586
exon900217902167
exon902246902731
exon902866902988
exon903124903378
exon903830903997
exon904091904562
exon904846905591
exon906287907586
CDS901739902167
CDS902246902731
CDS902866902988
CDS903124903378
CDS903830903997
CDS904091904562
CDS904846905591
CDS906287906526

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00403.25HMA3493
PF00403.25HMA108167
PF00122.19E1-E2_ATPase425611
PF00702.25Hydrolase628853

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005507copper ion binding
GO:0006812cation transport
GO:0006825copper ion transport
GO:0016021integral to membrane
GO:0019829cation-transporting ATPase activity
GO:0030001metal ion transport
GO:0043682copper-transporting ATPase activity
GO:0046872metal ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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